hif-1;pha-4

Lifespan changes: From wild type to hif-1;pha-4

There is no network for this step.
Fullscreen mode
Hide graph
Legend

Genetic mutants with hif-1, pha-4 alterations

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    25

  • Diet

    OP50

  • Lifespan (days)

    16.5

  • Lifespan change (compared to wild type)

    17.86%

  • Phenotype

    pha-4 RNAi slightly reduced lifespan in both N2 and hif-1 backgrounds, but hif-1 extended lifespan of animals treated with control or pha-4 RNAi to a similar level. Thus, lifespan extension by hif-1 does not require PHA-4.

  • Lifespan comparisons

    Double mutant hif-1(ia04);pha-4(RNAi) has a lifespan of 16.5 days, while single mutant hif-1(ia04) has a lifespan of 17.8 days, single mutant pha-4(RNAi) has a lifespan of 12.5 days and wild type has a lifespan of 14.0 days.

  • Type of interaction
    See methods

    Opposite lifespan effects of single mutants

  • Citation
    View abstract

    Chen D et al., 2009, HIF-1 modulates dietary restriction-mediated lifespan extension via IRE-1 in Caenorhabditis elegans. PLoS Genet. 5(5):e1000486 PubMed 19461873 Click here to select all mutants from this PubMed ID in the graph

Search genes: hif-1 pha-4
  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

HIF (Hypoxia Inducible Factor) homologa;Hypoxia-inducible factor 1


Locus: CELE_F38A6.3


Wormbase description: hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans.


  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

Defective pharyngeal development protein 4


Locus: CELE_F38A6.1


Wormbase description: pha-4 encodes a FoxA transcription factor; during embryonic development, PHA-4 functions as an organ identity gene whose activity is necessary and sufficient for development of the pharynx/foregut; in addition, PHA-4 plays a key role in regulation of diet-restriction-induced longevity in adult animals; PHA-4 expression begins early in embryogenesis and is seen in pharyngeal and intestinal cells (foregut and midgut); PHA-4 is also expressed later in the developing somatic gonad.


Orthologs of hif-1;pha-4 in SynergyAge
Show in SynergyAge
Species Gene
Orthologs of hif-1 in SynergyAge
Show in SynergyAge
Species Gene
Orthologs of pha-4 in SynergyAge
Show in SynergyAge
Species Gene
About

SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way.

Read more about SynergyAge database

How to cite us

If you would like to cite this database please use:

Bunu, G., Toren, D., Ion, C. et al. SynergyAge, a curated database for synergistic and antagonistic interactions of longevity-associated genes. Sci Data 7, 366 (2020). https://doi.org/10.1038/s41597-020-00710-z

Contact
Robi Tacutu, Ph.D.
Head: Systems Biology of Aging Group, Bioinformatics & Structural Biochemistry Department
Institute of Biochemistry, Ground floor
Splaiul Independentei 296, Bucharest, Romania
Email:

Group webpage: www.aging-research.group