pkc-2;trpa-1

Lifespan changes: From wild type to pkc-2;trpa-1

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Genetic mutants with pkc-2, trpa-1 alterations

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    15

  • Diet

    NGM

  • Lifespan (days)

    22.81

  • Lifespan change (compared to wild type)

    -16.08%

  • Phenotype

    The short-lived phenotype of pkc-2; trpa-1double mutant at low temperatures is similar to that of trpa-1 and pkc-2 single mutants, showing that the effect of these two genes on lifespan is not additive. This provides additional evidence that TRPA-1 and PKC-2 act in the same pathway.

  • Lifespan comparisons

    Double mutant pkc-2(ok328);trpa-1(ok999) has a lifespan of 22.81 days, while single mutant pkc-2(ok328) has a lifespan of 22.81 days, single mutant trpa-1(ok999) has a lifespan of 23.75 days and wild type has a lifespan of 27.18 days.

  • Type of interaction
    See methods

    Dependent

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

  • Temperature °C

    20

  • Diet

    NGM

  • Lifespan (days)

    16.0

  • Lifespan change (compared to wild type)

    -20.00%

  • Phenotype

    The short-lived phenotype of pkc-2; trpa-1double mutant is similar to that of trpa-1 and pkc-2 single mutants, showing that the effect of these two genes on lifespan is not additive. This provides additional evidence that TRPA-1 and PKC-2 act in the same pathway.

  • Lifespan comparisons

    Double mutant pkc-2(ok328);trpa-1(ok999) has a lifespan of 16.0 days, while single mutant pkc-2(ok328) has a lifespan of 17.5 days, single mutant trpa-1(ok999) has a lifespan of 17.0 days and wild type has a lifespan of 20.0 days.

  • Type of interaction
    See methods

    Almost additive (negative)

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

  • Temperature °C

    25

  • Diet

    NGM

  • Lifespan (days)

    13.95

  • Lifespan change (compared to wild type)

    -2.92%

  • Phenotype

    The short-lived phenotype of pkc-2; trpa-1double mutant is similar to that of trpa-1 and pkc-2 single mutants, showing that the effect of these two genes on lifespan is not additive. This provides additional evidence that TRPA-1 and PKC-2 act in the same pathway.

  • Lifespan comparisons

    Double mutant pkc-2(ok328);trpa-1(ok999) has a lifespan of 13.95 days, while single mutant pkc-2(ok328) has a lifespan of 13.95 days, single mutant trpa-1(ok999) has a lifespan of 15.2 days and wild type has a lifespan of 14.37 days.

  • Type of interaction
    See methods

    Opposite lifespan effects of single mutants

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Diet

    NGM

  • Lifespan (days)

    19.7

  • Phenotype

    Loss of pkc-2 fully suppresses the long-lived phenotype of trpa-1 transgenic worms.

  • Lifespan comparisons

    Double mutant pkc-2(ok328);trpa-1(xuEx601) has a lifespan of 19.7 days, while single mutant trpa-1(xuEx601) has a lifespan of 23.9 days and single mutant pkc-2(ok328) has a lifespan of 19.2 days.

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

  • Temperature °C

    20

  • Diet

    NGM

  • Lifespan (days)

    18.7

  • Phenotype

    Loss of pkc-2 fully suppresses the long-lived phenotype of trpa-1 transgenic worms.

  • Lifespan comparisons

    Double mutant pkc-2(ok328);trpa-1(xuEx601) has a lifespan of 18.7 days, while single mutant trpa-1(xuEx601) has a lifespan of 21.6 days and single mutant pkc-2(ok328) has a lifespan of 18.5 days.

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Diet

    NGM

  • Lifespan (days)

    19.3

  • Phenotype

    Loss of pkc-2 fully suppresses the long-lived phenotype of trpa-1 transgenic worms.

  • Lifespan comparisons

    Double mutant pkc-2(ok328);trpa-1(xuEx619) has a lifespan of 19.3 days, while single mutant trpa-1(xuEx619) has a lifespan of 22.1 days and single mutant pkc-2(ok328) has a lifespan of 18.5 days.

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Diet

    NGM

  • Lifespan (days)

    25.33

  • Lifespan change (compared to wild type)

    35.74%

  • Phenotype

    pkc-2 transgene can fully suppress the short-lived phenotype of trpa-1 mutant worms, consistent with the model that PKC-2 acts downstream of TRPA-1.

  • Lifespan comparisons

    Double mutant pkc-2(xuEx913);trpa-1(ok999) has a lifespan of 25.33 days, while single mutant pkc-2(xuEx913) has a lifespan of 25.33 days, single mutant trpa-1(ok999) has a lifespan of 17.3 days and wild type has a lifespan of 18.66 days.

  • Type of interaction
    See methods

    Opposite lifespan effects of single mutants

  • Citation
    View abstract

    Xiao R et al., 2013, A genetic program promotes C. elegans longevity at cold temperatures via a thermosensitive TRP channel. Cell. 152(4):806-17 PubMed 23415228 Click here to select all mutants from this PubMed ID in the graph

Search genes: pkc-2 trpa-1
  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

Protein kinase C;Protein kinase C-like 2


Locus: CELE_E01H11.1


Wormbase description: pkc-2 encodes protein kinases similar to the classical protein kinase C family of Ca2+/diacylglycerol-stimulated kinases; when expressed in insect cells, one PKC-2 isoform exhibits Ca2+-dependent serine phosphorylation; PKC-2 isoforms are expressed in neurons, the intestine, muscles cells, and the somatic distal gonad, including the spermatheca; in neurons, PKC-2 localizes to the cell body and to neuronal processes; PKC-2 is expressed at low levels in embryos, with expression increasing 10-fold during the L1 larval stage, and then continuing at lower levels throughout post-embryonic development; fractionation experiments indicate that in young adults and mid-L1 and L2 larvae, PKC-2 isoforms are nearly evenly distributed between the cytosol and organelles and/or the cytoskeleton; in egg-laying adults, approximately 70% of PKC-2 is found in the cytosol.


  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

TRPA cation channel homolog;Transient receptor potential cation channel subfamily A member 1 homolog


Locus: CELE_C29E6.2


Wormbase description: trpa-1 encodes a transient receptor potential (TRP) ion channel orthologous to the vertebrate and Drosophila TRPA1 channels; in C. elegans, trpa-1 activity is required for specific mechanosensory behaviors such as nose-touch avoidance and touch-mediated foraging; when expressed in mammalian cells, TRPA-1 exhibits channel activity in response to mechanical stimulation; TRPA-1::GFP reporters are expressed in a number of different cell types including sensory neurons, muscle, and epithelial cells.


Orthologs of pkc-2;trpa-1 in SynergyAge
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Orthologs of pkc-2 in SynergyAge
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Orthologs of trpa-1 in SynergyAge
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About

SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way.

Read more about SynergyAge database

How to cite us

If you would like to cite this database please use:

Bunu, G., Toren, D., Ion, C. et al. SynergyAge, a curated database for synergistic and antagonistic interactions of longevity-associated genes. Sci Data 7, 366 (2020). https://doi.org/10.1038/s41597-020-00710-z

Contact
Robi Tacutu, Ph.D.
Head: Systems Biology of Aging Group, Bioinformatics & Structural Biochemistry Department
Institute of Biochemistry, Ground floor
Splaiul Independentei 296, Bucharest, Romania
Email:

Group webpage: www.aging-research.group