clk-1;vhl-1

Lifespan changes: From wild type to clk-1;vhl-1

There is no network for this step.
Fullscreen mode
Hide graph
Legend

Genetic mutants with clk-1, vhl-1 alterations

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Lifespan (days)

    20.4

  • Lifespan change (compared to wild type)

    33.33%

  • Phenotype

    vhl-1(RNAi) extended the lifespan of wild type while not affecting the long lifespan of clk-1(qm30) mutants.

  • Lifespan comparisons

    Double mutant clk-1(qm30);vhl-1(RNAi) has a lifespan of 20.4 days, while single mutant vhl-1(RNAi) has a lifespan of 18.1 days, single mutant clk-1(qm30) has a lifespan of 21.4 days and wild type has a lifespan of 15.3 days.

  • Type of interaction
    See methods

    Dependent

  • Citation
    View abstract

    Lee SJ et al., 2010, Inhibition of respiration extends C. elegans life span via reactive oxygen species that increase HIF-1 activity. Curr Biol. 20(23):2131-6 PubMed 21093262 Click here to select all mutants from this PubMed ID in the graph

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Lifespan (days)

    23.0

  • Lifespan change (compared to wild type)

    41.10%

  • Phenotype

    Mutations in vhl-1 increased the lifespan of wild type but did not further extend the lifespan of clk-1(qm30) mutants.

  • Lifespan comparisons

    Double mutant clk-1(qm30);vhl-1(ok161) has a lifespan of 23.0 days, while single mutant vhl-1(ok161) has a lifespan of 23.1 days, single mutant clk-1(qm30) has a lifespan of 24.6 days and wild type has a lifespan of 16.3 days.

  • Type of interaction
    See methods

    Antagonistic (positive)

  • Citation
    View abstract

    Lee SJ et al., 2010, Inhibition of respiration extends C. elegans life span via reactive oxygen species that increase HIF-1 activity. Curr Biol. 20(23):2131-6 PubMed 21093262 Click here to select all mutants from this PubMed ID in the graph

Search genes: clk-1 vhl-1
  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

5-demethoxyubiquinone hydroxylase, mitochondrial


Locus: CELE_ZC395.2


Wormbase description: clk-1 encodes the C. elegans ortholog of COQ7/CAT5, a highly conserved demethoxyubiquinone (DMQ) hydroxylase that is necessary for the biosynthesis of ubiquinone (coenzyme Q, Q9) from 5-demethoxyubiquinone (DMQ9); in C. elegans, CLK-1 activity is required for normal physiological rates of growth, development, behavior, and aging, as well as for normal brood sizes.


  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

von Hippel-Lindau tumor suppressor homolog


Locus: CELE_F08G12.4


Wormbase description: vhl-1 is orthologous to the mammalian von Hippel-Landau tumor suppressor VHL, which is a cullin E3 ubiquitin ligase; vhl-1 promotes the ubiquitination and degradation of the hif-1 hypoxic response transcription factor; vhl-1 and hif-1 act to modulate life span and proteotoxicity, vhl-1 mutants live longer compared to wild-type, by a mechanism separate from dietary restriction and insulin signaling; vhl-1 may also have a hif-1 independent function related to the extracellular matrix.


Orthologs of clk-1;vhl-1 in SynergyAge
Show in SynergyAge
Species Gene
Orthologs of clk-1 in SynergyAge
Show in SynergyAge
Species Gene
Orthologs of vhl-1 in SynergyAge
Show in SynergyAge
Species Gene
About

SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way.

Read more about SynergyAge database

How to cite us

If you would like to cite this database please use:

Bunu, G., Toren, D., Ion, C. et al. SynergyAge, a curated database for synergistic and antagonistic interactions of longevity-associated genes. Sci Data 7, 366 (2020). https://doi.org/10.1038/s41597-020-00710-z

Contact
Robi Tacutu, Ph.D.
Head: Systems Biology of Aging Group, Bioinformatics & Structural Biochemistry Department
Institute of Biochemistry, Ground floor
Splaiul Independentei 296, Bucharest, Romania
Email:

Group webpage: www.aging-research.group