ced-13;ced-4;isp-1

Lifespan changes: From wild type to ced-13;ced-4;isp-1

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Genetic mutants with ced-13, ced-4, isp-1 alterations

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Diet

    OP50

  • Lifespan (days)

    26.32

  • Lifespan change (compared to wild type)

    30.36%

  • Lifespan comparisons

    Triple mutant ced-13(sv32);ced-4(n1162);isp-1(qm150) has a lifespan of 26.32 days, while single mutant ced-13(sv32) has a lifespan of 19.44 days, double mutant ced-4(n1162);isp-1(qm150) has a lifespan of 25.97 days and wild type has a lifespan of 20.19 days.

  • Citation
    View abstract

    Yee C et al., 2014, The intrinsic apoptosis pathway mediates the pro-longevity response to mitochondrial ROS in C. elegans. Cell. 157(4):897-909 PubMed 24813612 Click here to select all mutants from this PubMed ID in the graph

  • Temperature °C

    20

  • Diet

    OP50

  • Lifespan (days)

    26.16

  • Lifespan change (compared to wild type)

    27.73%

  • Lifespan comparisons

    Triple mutant ced-13(sv32);ced-4(n1162);isp-1(qm150) has a lifespan of 26.16 days, while single mutant ced-13(sv32) has a lifespan of 19.92 days, double mutant ced-4(n1162);isp-1(qm150) has a lifespan of 27.02 days and wild type has a lifespan of 20.48 days.

  • Type of interaction
    See methods

    Contains dependence

  • Citation
    View abstract

    Yee C et al., 2014, The intrinsic apoptosis pathway mediates the pro-longevity response to mitochondrial ROS in C. elegans. Cell. 157(4):897-909 PubMed 24813612 Click here to select all mutants from this PubMed ID in the graph

  • Temperature °C

    20

  • Diet

    OP50

  • Lifespan (days)

    25.98

  • Lifespan change (compared to wild type)

    25.27%

  • Lifespan comparisons

    Triple mutant ced-13(sv32);ced-4(n1162);isp-1(qm150) has a lifespan of 25.98 days, while single mutant ced-13(sv32) has a lifespan of 19.37 days, double mutant ced-4(n1162);isp-1(qm150) has a lifespan of 26.02 days and wild type has a lifespan of 20.74 days.

  • Citation
    View abstract

    Yee C et al., 2014, The intrinsic apoptosis pathway mediates the pro-longevity response to mitochondrial ROS in C. elegans. Cell. 157(4):897-909 PubMed 24813612 Click here to select all mutants from this PubMed ID in the graph

Search genes: ced-13 ced-4 isp-1 ced-13;ced-4;isp-1
  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

hypothetical protein


Locus: CELE_R09F10.9


Wormbase description: ced-13 encodes a 98-residue protein with a single BH3 domain, whose overexpression promotes CED-3/4-dependent apoptosis; CED-13 binds the Bcl-2 ortholog CED-9, and ced-13 is transcriptionally activated by the p53 ortholog CEP-1, and the ced-13 promoter contains several potential p53-binding sites; ced-13 mutations are mostly indistinguishable from wild-type, but may enhance the abnormal response to germline irradiation seen for egl-1 mutations; peptides containing the BH3 domains of either CED-13 or EGL-1 can dissociate stable CED-4/CED-9 heterotetramers in vitro if CED-9 is wild-type, but not if CED-9 has a gain-of-function G169E mutation.


  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

Cell death protein 4


Locus: CELE_C35D10.9


Wormbase description: ced-4 encodes a novel protein; along with CED-3, CED-4 is required for the initiation of programmed cell death; accordingly, genetic analyses indicate that ced-3 and ced-4 function upstream of ced-1, ced-2, and nuc-1 in the programmed cell death pathway; in yeast two-hybrid experiments, and upon coexpression in mammalian cells, CED-4 interacts with CED-9, an anti-apoptotic BCL-2 homolog; coexpression of CED-4 and CED-9 results in redistribution of CED-4 from the cytosol to organellar membranes, suggesting that CED-9 may negatively regulate CED-4 activity by sequestering CED-4 to intracellular membranes.


  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

Cytochrome b-c1 complex subunit Rieske, mitochondrial


Locus: CELE_F42G8.12


Wormbase description: isp-1 encodes a Rieske iron sulphur protein (ISP) which is a subunit of the mitochondrial complex III in the mitochondrial membrane; the subunits are highly conserved in all mitochondria and aerobic bacteria; mitochondrial complex III catalyses electron transport from ubiquinol to cytochrome c; isp-1 mutants show low oxygen consumption, a decreased sensitivity to reactive oxygen species and increased lifespan suggesting that mitochondrial electron transport is a key factor affecting life span; isp-1 affects the rates of physiological processes like reproduction and development and also affects behavior.


Orthologs of ced-13;ced-4;isp-1 in SynergyAge
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Orthologs of ced-13 in SynergyAge
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Species Gene
Orthologs of ced-4 in SynergyAge
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Species Gene
Orthologs of isp-1 in SynergyAge
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About

SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way.

Read more about SynergyAge database

How to cite us

If you would like to cite this database please use:

Bunu, G., Toren, D., Ion, C. et al. SynergyAge, a curated database for synergistic and antagonistic interactions of longevity-associated genes. Sci Data 7, 366 (2020). https://doi.org/10.1038/s41597-020-00710-z

Contact
Robi Tacutu, Ph.D.
Head: Systems Biology of Aging Group, Bioinformatics & Structural Biochemistry Department
Institute of Biochemistry, Ground floor
Splaiul Independentei 296, Bucharest, Romania
Email:

Group webpage: www.aging-research.group