sod-1;xbp-1

Lifespan changes: From wild type to sod-1;xbp-1

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Genetic mutants with sod-1, xbp-1 alterations

    Names of genes are ordered alphabetically. For the order of interventions, please see the specific paper.
  • Temperature °C

    20

  • Lifespan (days)

    27.8

  • Lifespan change (compared to wild type)

    27.52%

  • Phenotype

    RNAi of ire-1 and xbp-1 markedly reduced hsp-4::gfp expression in both the presence and the absence of sod-1 OE.

  • Lifespan comparisons

    Double mutant sod-1(wuIs152);xbp-1(RNAi) has a lifespan of 27.8 days, while single mutant xbp-1(RNAi) has a lifespan of 19.3 days, single mutant sod-1(wuIs152) has a lifespan of 32.6 days and wild type has a lifespan of 21.8 days.

  • Type of interaction
    See methods

    Opposite lifespan effects of single mutants

  • Citation
    View abstract

    Cabreiro F et al., 2011, Increased life span from overexpression of superoxide dismutase in Caenorhabditis elegans is not caused by decreased oxidative damage. Free Radic Biol Med. 51(8):1575-82 PubMed 21839827 Click here to select all mutants from this PubMed ID in the graph

  • Temperature °C

    20

  • Lifespan (days)

    22.0

  • Lifespan change (compared to wild type)

    11.68%

  • Phenotype

    RNAi of ire-1 and xbp-1 markedly reduced hsp-4::gfp expression in both the presence and the absence of sod-1 OE.

  • Lifespan comparisons

    Double mutant sod-1(wuIs152);xbp-1(RNAi) has a lifespan of 22.0 days, while single mutant xbp-1(RNAi) has a lifespan of 18.8 days, single mutant sod-1(wuIs152) has a lifespan of 25.4 days and wild type has a lifespan of 19.7 days.

  • Type of interaction
    See methods

    Opposite lifespan effects of single mutants

  • Citation
    View abstract

    Cabreiro F et al., 2011, Increased life span from overexpression of superoxide dismutase in Caenorhabditis elegans is not caused by decreased oxidative damage. Free Radic Biol Med. 51(8):1575-82 PubMed 21839827 Click here to select all mutants from this PubMed ID in the graph

Search genes: sod-1 xbp-1
  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

Superoxide dismutase [Cu-Zn]


Locus: CELE_C15F1.7


Wormbase description: sod-1 encodes the copper/zinc superoxide dismustase, an enzyme that is known to protect cells from oxidative damage; superoxide dismutase activity can be detected in worm extracts; sod-1 activity has been implicated in the increased life-span of dauer larvae where this enzyme demonstrates the highest activity compared to other life-stages as well as in the increased life span of age-1 mutants and their resistance to oxidative damage; sod-1 modulates the effect of let-60 ras on vulval and germline development via cytoplasmic reactive oxygen species; unlike other eukaryotic superoxide dismutases, sod-1 does not require the copper chaperone CCS for its activity and instead uses a glutathione pathway for acquiring copper; in humans, mutation of SOD1 (OMIM:147450) leads to amyotrophic lateral sclerosis (OMIM:105400).


  • Entrez ID
  • Symbol
  • GenAge
  • Wormbase ID

X-box Binding Protein homolog


Locus: CELE_R74.3


Wormbase description: xbp-1 encodes a bZIP transcription factor orthologous to yeast Hac1 and mammalian X box-binding protein 1 (XBP-1, OMIM:194355); XBP-1 is required for the unfolded protein response (UPR) that counteracts cellular stress induced by accumulation of unfolded proteins in the endoplasmic reticulum (ER); xbp-1 mRNA is spliced by the IRE-1 endoribonuclease to promote translation of transcriptionally active XBP-1 that positively regulates UPR gene expression to maintain ER homeostasis and promote normal development; loss of xbp-1 activity also results in near-complete loss of myo-2 pharnygeal myosin expression, although pharyngeal muscle is still present.


Orthologs of sod-1;xbp-1 in SynergyAge
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Species Gene
Orthologs of sod-1 in SynergyAge
Show in SynergyAge
Species Gene
Drosophila melanogaster Sod1
Mus musculus Sod1
Orthologs of xbp-1 in SynergyAge
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Species Gene
About

SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way.

Read more about SynergyAge database

How to cite us

If you would like to cite this database please use:

Bunu, G., Toren, D., Ion, C. et al. SynergyAge, a curated database for synergistic and antagonistic interactions of longevity-associated genes. Sci Data 7, 366 (2020). https://doi.org/10.1038/s41597-020-00710-z

Contact
Robi Tacutu, Ph.D.
Head: Systems Biology of Aging Group, Bioinformatics & Structural Biochemistry Department
Institute of Biochemistry, Ground floor
Splaiul Independentei 296, Bucharest, Romania
Email:

Group webpage: www.aging-research.group